Class A (E.coli - plasmid RP1 - tetA and tetR genes)
ID ECPRPT standard; DNA; PRO; 2709 BP.
XX
AC X00006;
XX
NI g42508
XX
DT 20-FEB-1985 (Rel. 05, Created)
DT 14-JAN-1994 (Rel. 38, Last updated, Version 3)
XX
DE E.coli plasmid RP1 tetracycline resistance (tet) determinants:
DE regulatory gene tetR and resistance gene tetA
XX
KW plasmid; regulatory protein; tetracycline resistance.
XX
OS unidentified bacterium
OC Eubacteria; environmental samples.
XX
OG Plasmid RP1
XX
RN [1]
RP 1-2709
RX MEDLINE; 83299270.
RA Waters S.H., Rogowsky P., Grinsted J., Altenbuchner J., Schmitt R.;
RT "The tetracycline resistance determinants of RP1 and Tn1721:
RT Nucleotide sequence analysis";
RL Nucleic Acids Res. 11:6089-6105(1983).
XX
DR SWISS-PROT; P02982; TCR1_ECOLI.
DR SWISS-PROT; P03038; TER1_ECOLI.
XX
FH Key Location/Qualifiers
FH
FT source 1..2709
FT /organism="Prokaryota"
FT /plasmid="Plasmid RP1"
FT variation 318..318
FT /note="C is U in transposon Tn1721"
FT misc_feature complement(1222..1222)
FT /note="putative primary transcript (tetR1)"
FT CDS complement(575..1222)
FT /note="tetR regulatory protein"
FT /db_xref="PID:g42509"
FT /db_xref="SWISS-PROT:P03038"
FT /translation="MTKLQPNTVIRAALDLLNEVGVDGLTTRKLAERLGVQQPALYWHF
FT RNKRALLDALAEAMLAENHSTSVPRADDDWRSFLTGNARSFRQALLAYRDGARIHAGTR
FT PGAPQMETADAQLRFLCEAGFSAGDAVNALMTISYFTVGAVLEEQAGDSESGERGGTVE
FT QAPLSPLLRAAIDAFDEAGPDAAFEQGLAVIVDGLAKRRLVVRNVEGPRKGDD"
FT promoter 1225..1246
FT /note="-35 region, tetA"
FT misc_signal 1232..1235
FT /note="put. palindromic operator sequence O(L) left"
FT promoter complement(1230..1235)
FT /note="-10 region, tetR1"
FT misc_feature complement(1241..1241)
FT /note="putative secondary transcript (tetR2)"
FT promoter 1249..1254
FT /note="-10 region, tetA"
FT promoter complement(1248..1253)
FT /note="putative secondary promoter -10 region, tetR2"
FT promoter complement(1254..1259)
FT /note="-35 region, tetR1"
FT misc_signal 1265..1277
FT /note="put.palindromic operator sequence O(R) right binding
FT tet repressor"
FT promoter complement(1272..1277)
FT /note="putative secondary promoter -35 region, tetR2"
FT CDS 1328..2539
FT /note="possible tetA protein"
FT /db_xref="PID:e2574"
FT CDS 1328..2524
FT /note="possible tetA protein"
FT /db_xref="PID:e2575"
FT /db_xref="SWISS-PROT:P02982"
FT /translation="MKPNIPLIVILSTVALDAVGIGLIMPVLPGLLRDLVHSNDVTAHY
FT GILLALYALVQFACAPVLGALSDRFGRRPILLVSLAGATVDYAIMATAPFLWVLYIGRI
FT VAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPF
FT FAAAALNGLNFLTGCFLLPESHKGERRPLRREALNPLSFVRWARGMTVVAALMAVFFIM
FT QLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVAARLGERRALM
FT LGMIADGTGYILLAFATRGWMAFPIMVLLASGGIGMPALQAMLSRQVDEERQGQLQGSL
FT AALTSLTSIVGPLLFTAIYAASITTWNGWAWIAGAALYLLCLPALRRGLWSGAGQRADR
FT "
FT variation 1341..1341
FT /note="U is G in transposon Tn1721"
FT variation 1490..1490
FT /note="G is A in transposon Tn1721"
FT variation 1549..1550
FT /note="AA is GG in transposon Tn1721"
FT variation 1576..1577
FT /note="CA is UG in transposon Tn1721"
XX
SQ Sequence 2709 BP; 468 A; 861 C; 858 G; 522 T; 0 other;
CTCGCACACG GCTTCGACGG CGTTTCTGGC GCGTTTGCAG GGCCATAGAC GGCCGCCAGC 60
CCAGCGGCGA GGGCAACCAG CCCGGTGAGC GTCGGAAAGG CGCTGGAAGC CCCGTAGCGA 120
CGCGGAGAGG GGCGAGACAA GCCAAGGGCG CAGGCTCGAG TCGCAGCACG ACATAGCCGG 180
TTCTCGCAAG GACGAGAATT TCCCTGCGGT GCCCCTCAAG TGTCAATGAA AGTTTCCAAC 240
GCGAGCCATT CGCGAGAGCC TTGAGTCCAC GCTAGATCTA TCTCATCTGC GCAAGGCAGA 300
ACGTGAAGAC GGCCGCCCTG GACCTCGCCC GCGAGCGCCA GCGCACGAGG CCGGCGCGCG 360
GACCCGCCGC GGCCCACGAG CGGACGCCGC AGCAGGAGCG CCAGAAGGCC GCCAGAGAGG 420
CCGAGCGCGG CGTGAGGCTT GGACGCTAGG GCAGGGCATG AAAAAGCCCG TAGCGGGCGC 480
TACGGGGCTC TGACGCGGTG GAAAGGGGGA GGGGATGTTG TCTACATGGC TCTGCTGTAG 540
TGAGTGGGTT GCGCTCCGGC AGCGGTCCTG ATCAATCGTC ACCCTTTCTC GGTCCTTCAA 600
CGTTCCTGAC AACGAGCCTC CTTTTCGCCA ATCCATCGAC AATCACCGCG AGTCCCTGCT 660
CGAACGCTGC GTCCGGACCG GCTTCGTCGA AGGCGTCTAT CGCGGCCCGC AACAGCGGCG 720
AGAGCGGAGC CTGTTCAACG GTGCCGCCGC GCTCGCCGGA CTCGCTGTCG CCGGCCTGCT 780
CCTCAAGCAC GGCCCCAACA GTGAAGTAGC TGATTGTCAT CAGCGCATTG ACGGCGTCCC 840
CGGCCGAAAA ACCCGCCTCG CAGAGGAAGC GAAGCTGCGC GTCGGCCGTT TCCATCTGCG 900
GTGCGCCCGG TCGCGTGCCG GCATGGATGC GCGCGCCATC GCGGTAGGCG AGCAGCGCCT 960
GCCTGAAGCT GCGGGCATTC CCAGTCAGAA ATGAGCGCCA GTCGTCGTCG GCTCTCGGCA 1020
CCGAAGTGCT ATGATTCTCC GCCAGCATGG CTTCGGCCAG TGCGTCGAGC AGCGCCCGCT 1080
TGTTCCTGAA GTGCCAGTAA AGCGCCGGCT GCTGAACCCC CAACCGTTCC GCCAGTTTGC 1140
GTGTCGTCAG ACCGTCTACG CCGACCTCGT TCAACAGGTC TAGGGCGGCA CGGATCACTG 1200
TATTCGGCTG CAACTTTGTC ATGCTTGACA CTTTATCACT GATAAACATA ATATGTCCAC 1260
CAACTTATCA GTGATAAAGA ATCCGCGCGT TCAATCGGAC CAGCGGAGGC TGGTCCGGAG 1320
GCCAGACGTG AAACCCAACA TACCCCTGAT CGTAATTCTG AGCACTGTCG CGCTCGACGC 1380
TGTCGGCATC GGCCTGATTA TGCCGGTGCT GCCGGGCCTC CTGCGCGATC TGGTTCACTC 1440
GAACGACGTC ACCGCCCACT ATGGCATTCT GCTGGCGCTG TATGCGTTGG TGCAATTTGC 1500
CTGCGCACCT GTGCTGGGCG CGCTGTCGGA TCGTTTCGGG CGGCGGCCAA TCTTGCTCGT 1560
CTCGCTGGCC GGCGCCACTG TCGACTACGC CATCATGGCG ACAGCGCCTT TCCTTTGGGT 1620
TCTCTATATC GGGCGGATCG TGGCCGGCAT CACCGGGGCG ACTGGGGCGG TAGCCGGCGC 1680
TTATATTGCC GATATCACTG ATGGCGATGA GCGCGCGCGG CACTTCGGCT TCATGAGCGC 1740
CTGTTTCGGG TTCGGGATGG TCGCGGGACC TGTGCTCGGT GGGCTGATGG GCGGTTTCTC 1800
CCCCCACGCT CCGTTCTTCG CCGCGGCAGC CTTGAACGGC CTCAATTTCC TGACGGGCTG 1860
TTTCCTTTTG CCGGAGTCGC ACAAAGGCGA ACGCCGGCCG TTACGCCGGG AGGCTCTCAA 1920
CCCGCTCAGC TTCGTTCGGT GGGCCCGGGG CATGACCGTC GTCGCCGCCC TGATGGCGGT 1980
CTTCTTCATC ATGCAACTTG TCGGACAGGT GCCGGCCGCG CTTTGGGTCA TTTTCGGCGA 2040
GGATCGCTTT CACTGGGACG CGACCACGAT CGGCATTTCG CTTGCCGCAT TTGGCATTCT 2100
GCATTCACTC GCCCAGGCAA TGATCACCGG CCCTGTAGCC GCCCGGCTCG GCGAAAGGCG 2160
GGCACTCATG CTCGGAATGA TTGCCGACGG CACAGGCTAC ATCCTGCTTG CCTTCGCGAC 2220
ACGGGGATGG ATGGCGTTCC CGATCATGGT CCTGCTTGCT TCGGGTGGCA TCGGAATGCC 2280
GGCGCTGCAA GCAATGTTGT CCAGGCAGGT GGATGAGGAA CGCCAGGGGC AGCTGCAAGG 2340
CTCACTGGCG GCGCTCACCA GCCTGACCTC GATCGTCGGA CCCCTCCTCT TCACGGCGAT 2400
CTATGCGGCT TCTATAACAA CGTGGAACGG GTGGGCATGG ATTGCAGGCG CTGCCCTCTA 2460
CTTGCTCTGC CTGCCGGCGC TGCGTCGCGG GCTTTGGAGC GGCGCAGGGC AACGAGCCGA 2520
TCGCTGATCG TGGAAACGAT AGGCCTATGC CATGCGGGTC AAGGCGACTT CCGGCAAGCT 2580
ATACGCGCCC TAGGAGTGCG GTTGGAACGT TGGCCCAGCC AGACACTCCC GATCACGAGC 2640
AGGACGCCGA TGATTTGAAG CGCACTCAGC GTCTGATCCA AGAACAACCA TCCTAGCAAC 2700
AGCGCGGCG 2709
//